{
  "_id": "6a1541e4acfb0bcc41d56150",
  "Package": "archaeacentre",
  "Title": "Default plots and functions for the German Archaea Centre",
  "Version": "1.1.0",
  "Date": "2025-02-03",
  "Authors@R": "person(\"Richard\", \"Stöckl\", , \"richard.stoeckl@ur.de\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-0451-0652\"))",
  "Description": "Default plots and functions for the German Archaea Centre.",
  "License": "BSL-1.0",
  "URL": "https://github.com/richardstoeckl/archaeacentre",
  "BugReports": "https://support.bioconductor.org/tag/archaeacentre",
  "biocViews": "Software",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "Config/testthat/edition": "3",
  "VignetteBuilder": "knitr",
  "LazyData": "true",
  "Config/pak/sysreqs": "cmake make libicu-dev libssl-dev",
  "Repository": "https://richardstoeckl.r-universe.dev",
  "Date/Publication": "2025-02-12 16:24:14 UTC",
  "RemoteUrl": "https://github.com/richardstoeckl/archaeacentre",
  "RemoteRef": "v1.1.0",
  "RemoteSha": "c27de77fd92972946a7500b5b855be77b00bad75",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-26 06:43:37 UTC",
    "User": "root"
  },
  "Author": "Richard Stöckl [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-0451-0652>)",
  "Maintainer": "Richard Stöckl <richard.stoeckl@ur.de>",
  "MD5sum": "588fc55fb9de57cbac1c6dc1f48545b5",
  "_user": "richardstoeckl",
  "_type": "src",
  "_file": "archaeacentre_1.1.0.tar.gz",
  "_fileid": "b2a3d4c9d1d70a417a77336a8dd1e77f10aac7b7e014b49a5bd7aa0fbfa91bb8",
  "_filesize": 296074,
  "_sha256": "b2a3d4c9d1d70a417a77336a8dd1e77f10aac7b7e014b49a5bd7aa0fbfa91bb8",
  "_created": "2026-05-26T06:43:37.000Z",
  "_published": "2026-05-26T06:47:00.606Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77821297605,
      "time": 168,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7210552809"
    },
    {
      "job": 77821297545,
      "time": 167,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7210552476"
    },
    {
      "job": 77821297548,
      "time": 131,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7210540484"
    },
    {
      "job": 77821297573,
      "time": 121,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7210537716"
    },
    {
      "job": 77820842601,
      "time": 226,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7210512728"
    },
    {
      "job": 77821297532,
      "time": 125,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7210542819"
    },
    {
      "job": 77821297550,
      "time": 114,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7210539937"
    },
    {
      "job": 77821297560,
      "time": 99,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7210537131"
    },
    {
      "job": 77821297538,
      "time": 101,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7210536978"
    }
  ],
  "_buildurl": "https://github.com/r-universe/richardstoeckl/actions/runs/26436615147",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/richardstoeckl/archaeacentre",
  "_commit": {
    "id": "c27de77fd92972946a7500b5b855be77b00bad75",
    "author": "Richard Stöckl <richard.stoeckl@posteo.de>",
    "committer": "Richard Stöckl <richard.stoeckl@posteo.de>",
    "message": "version bump\n",
    "time": 1739377454
  },
  "_maintainer": {
    "name": "Richard Stöckl",
    "email": "richard.stoeckl@ur.de",
    "orcid": "0000-0002-0451-0652"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5",
      "role": "Depends"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "ggpubr",
      "role": "Imports"
    },
    {
      "package": "httr",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "scales",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "RefManageR",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "sessioninfo",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "richardstoeckl",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "software"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "richardstoeckl",
      "count": 22,
      "uuid": 66075827
    }
  ],
  "_userbio": {
    "uuid": 66075827,
    "type": "user",
    "name": "Richard Stöckl",
    "description": "PhD Student at the German Archaea Centre at the University of Regensburg. Mainly involved in sequencing and genome assembly, annotation, etc."
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/archaeacentre"
  },
  "_devurl": "https://github.com/richardstoeckl/archaeacentre",
  "_searchresults": 2,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/archaeacentre.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "%>%",
    "get_pfam_annotation_for_targets",
    "plotGrowthCurve"
  ],
  "_datasets": [
    {
      "name": "growthData",
      "title": "Example Dataset for microbial Growth Curves",
      "object": "growthData",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "replicate",
        "timepoint",
        "concentration",
        "organism"
      ],
      "rows": 42,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "get_pfam_annotation_for_targets",
      "title": "Retrieve Pfam Annotations for PDB Targets from RCSB API",
      "topics": [
        "get_pfam_annotation_for_targets"
      ]
    },
    {
      "page": "get_polymer_info",
      "title": "Retrieve Polymer Entity Identifiers and Pfam Annotations from RCSB API (batched)",
      "topics": [
        "get_polymer_info"
      ]
    },
    {
      "page": "growthData",
      "title": "Example Dataset for microbial Growth Curves",
      "topics": [
        "growthData"
      ]
    },
    {
      "page": "plotGrowthCurve",
      "title": "Plot a microbial growth curve",
      "topics": [
        "plotGrowthCurve"
      ]
    }
  ],
  "_readme": "https://github.com/richardstoeckl/archaeacentre/raw/v1.1.0/README.md",
  "_rundeps": [
    "abind",
    "askpass",
    "backports",
    "boot",
    "broom",
    "car",
    "carData",
    "cli",
    "colorspace",
    "corrplot",
    "cowplot",
    "cpp11",
    "curl",
    "Deriv",
    "doBy",
    "dplyr",
    "farver",
    "forecast",
    "Formula",
    "fracdiff",
    "generics",
    "ggplot2",
    "ggpubr",
    "ggrepel",
    "ggsci",
    "ggsignif",
    "glue",
    "gridExtra",
    "gtable",
    "httr",
    "isoband",
    "jsonlite",
    "labeling",
    "lattice",
    "lifecycle",
    "lme4",
    "lmtest",
    "magrittr",
    "MASS",
    "Matrix",
    "MatrixModels",
    "mgcv",
    "microbenchmark",
    "mime",
    "minqa",
    "modelr",
    "nlme",
    "nloptr",
    "nnet",
    "numDeriv",
    "openssl",
    "pbkrtest",
    "pillar",
    "pkgconfig",
    "polynom",
    "purrr",
    "quantreg",
    "R6",
    "rbibutils",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "RcppEigen",
    "Rdpack",
    "reformulas",
    "rlang",
    "rstatix",
    "S7",
    "scales",
    "SparseM",
    "stringi",
    "stringr",
    "survival",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "timeDate",
    "urca",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "zoo"
  ],
  "_vignettes": [
    {
      "source": "archaeacentre.Rmd",
      "filename": "archaeacentre.html",
      "title": "Introduction to the archaeacentre package",
      "author": "Richard Stöckl",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Basics",
        "Install archaeacentre",
        "Presets for growth curves of microbial growth data",
        "Plot a basic growth curve",
        "Modify your growth curve plot",
        "Get PDB Annotation data for a given PDB filename as returned by Foldseek"
      ],
      "created": "2025-02-03 14:35:12",
      "modified": "2025-02-10 12:43:00",
      "commits": 6
    }
  ],
  "_score": 2.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "archaeacentre",
  "_universes": [
    "richardstoeckl"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.0",
      "date": "2026-05-26T06:46:12.000Z",
      "distro": "noble",
      "commit": "c27de77fd92972946a7500b5b855be77b00bad75",
      "fileid": "db49713b35e92f0d62f62016e767bc96903cf3eba551660969b3b770b265e94b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/richardstoeckl/actions/runs/26436615147"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.1.0",
      "date": "2026-05-26T06:46:09.000Z",
      "distro": "noble",
      "commit": "c27de77fd92972946a7500b5b855be77b00bad75",
      "fileid": "60294fa97172b5fa882d94050ea454a079448a4c9641cd1b3ac050a9b7b7bbb9",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/richardstoeckl/actions/runs/26436615147"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.1.0",
      "date": "2026-05-26T06:45:34.000Z",
      "commit": "c27de77fd92972946a7500b5b855be77b00bad75",
      "fileid": "8050fbe57547bf08fe39728639b7e6b53cbd267a2d5ff112f1253092b42ae30b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/richardstoeckl/actions/runs/26436615147"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.1.0",
      "date": "2026-05-26T06:45:23.000Z",
      "commit": "c27de77fd92972946a7500b5b855be77b00bad75",
      "fileid": "5e7f477ffa71fdf818fa7045ae1ece2cfb33dcaf51e2cf5a8b81c3c797928ce4",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/richardstoeckl/actions/runs/26436615147"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.1.0",
      "date": "2026-05-26T06:46:00.000Z",
      "commit": "c27de77fd92972946a7500b5b855be77b00bad75",
      "fileid": "be6d7c7c5841040919f5b904f555848d2eae20807eeb31a855cc6cb318be1947",
      "status": "success",
      "buildurl": "https://github.com/r-universe/richardstoeckl/actions/runs/26436615147"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.1.0",
      "date": "2026-05-26T06:45:05.000Z",
      "commit": "c27de77fd92972946a7500b5b855be77b00bad75",
      "fileid": "d42e5c237699db3758157fe02f106df68ae45a2f3891697d9da3daf2842a7a1e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/richardstoeckl/actions/runs/26436615147"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.1.0",
      "date": "2026-05-26T06:45:05.000Z",
      "commit": "c27de77fd92972946a7500b5b855be77b00bad75",
      "fileid": "78d6866fc8ab01903b18c56aff13907e2a867e5a7c7f92a294f4a2de1e469735",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/richardstoeckl/actions/runs/26436615147"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.1.0",
      "date": "2026-05-26T06:45:03.000Z",
      "commit": "c27de77fd92972946a7500b5b855be77b00bad75",
      "fileid": "476bc75ca1108eae315e43c0daa4211db3eee23af005f620cf7614eeb0842b17",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/richardstoeckl/actions/runs/26436615147"
    }
  ]
}