{
  "_id": "6a170bf6acfb0bcc41d933f7",
  "Package": "rgbio",
  "Title": "High-Performance GenBank I/O using 'gb-io'",
  "Version": "0.4.0",
  "Authors@R": "person(\"Richard\", \"Stöckl\", , \"richard.stoeckl@ur.de\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-0451-0652\"))",
  "Description": "Interfaces with the 'gb-io' Rust crate to provide fast\nreading and writing of GenBank files. Supports parsing of\nsequences, features, and metadata into R-friendly data\nstructures.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "Config/rextendr/version": "0.4.2",
  "SystemRequirements": "Cargo (Rust's package manager), rustc >= 1.65.0, xz",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "xz-utils libclang-dev",
  "Repository": "https://richardstoeckl.r-universe.dev",
  "Date/Publication": "2026-05-27 13:37:35 UTC",
  "RemoteUrl": "https://github.com/richardstoeckl/rgbio",
  "RemoteRef": "v0.4.0",
  "RemoteSha": "b96a0a9f89d571692fe9e1388d2274c03f19b49d",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-27 15:13:17 UTC",
    "User": "root"
  },
  "Author": "Richard Stöckl [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-0451-0652>)",
  "Maintainer": "Richard Stöckl <richard.stoeckl@ur.de>",
  "MD5sum": "ab481e0c498b50a96263c2e969f0edb1",
  "_user": "richardstoeckl",
  "_type": "src",
  "_file": "rgbio_0.4.0.tar.gz",
  "_fileid": "104b8855c0ca926f3144759fe065ac9b36a1d657d9abbf120a09ba941c7f5684",
  "_filesize": 6309244,
  "_sha256": "104b8855c0ca926f3144759fe065ac9b36a1d657d9abbf120a09ba941c7f5684",
  "_created": "2026-05-27T15:13:17.000Z",
  "_published": "2026-05-27T15:21:26.867Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 78108711962,
      "time": 174,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7244196255"
    },
    {
      "job": 78108711808,
      "time": 164,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7244192217"
    },
    {
      "job": 78108712130,
      "time": 148,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7244185089"
    },
    {
      "job": 78108712045,
      "time": 168,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7244194178"
    },
    {
      "job": 78108711846,
      "time": 87,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7244159365"
    },
    {
      "job": 78108712029,
      "time": 278,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7244240978"
    },
    {
      "job": 78108711815,
      "time": 104,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7244166227"
    },
    {
      "job": 78108712242,
      "time": 426,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7244302009"
    },
    {
      "job": 78107734061,
      "time": 277,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7244121668"
    },
    {
      "job": 78108711766,
      "time": 145,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7244183371"
    },
    {
      "job": 78108711896,
      "time": 156,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7244188675"
    },
    {
      "job": 78108711973,
      "time": 137,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7244180356"
    },
    {
      "job": 78108711871,
      "time": 174,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7244196005"
    }
  ],
  "_buildurl": "https://github.com/r-universe/richardstoeckl/actions/runs/26519916041",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/richardstoeckl/rgbio",
  "_commit": {
    "id": "b96a0a9f89d571692fe9e1388d2274c03f19b49d",
    "author": "Richard Stöckl <richard.stoeckl@posteo.de>",
    "committer": "Richard Stöckl <richard.stoeckl@posteo.de>",
    "message": "prepare v0.4.0\n",
    "time": 1779889055
  },
  "_maintainer": {
    "name": "Richard Stöckl",
    "email": "richard.stoeckl@ur.de",
    "orcid": "0000-0002-0451-0652"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.2",
      "role": "Depends"
    },
    {
      "package": "Biostrings",
      "role": "Suggests"
    },
    {
      "package": "GenomicRanges",
      "role": "Suggests"
    },
    {
      "package": "IRanges",
      "role": "Suggests"
    },
    {
      "package": "S4Vectors",
      "role": "Suggests"
    },
    {
      "package": "tibble",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "richardstoeckl",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-07",
      "n": 3
    },
    {
      "week": "2026-08",
      "n": 1
    },
    {
      "week": "2026-09",
      "n": 5
    },
    {
      "week": "2026-10",
      "n": 2
    },
    {
      "week": "2026-11",
      "n": 2
    },
    {
      "week": "2026-22",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "v0.1.0",
      "date": "2026-02-25"
    },
    {
      "name": "v0.2.0",
      "date": "2026-02-27"
    },
    {
      "name": "v0.3.0",
      "date": "2026-03-09"
    },
    {
      "name": "v0.4.0",
      "date": "2026-05-27"
    }
  ],
  "_topics": [
    "bioinformatics",
    "bioinformatics-tool",
    "gbkfiles",
    "genbank-files",
    "genbank-parser",
    "r-language",
    "rust",
    "cargo"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "richardstoeckl",
      "count": 14,
      "uuid": 66075827
    },
    {
      "user": "copilot",
      "count": 8,
      "uuid": 198982749
    }
  ],
  "_userbio": {
    "uuid": 66075827,
    "type": "user",
    "name": "Richard Stöckl",
    "description": "PhD Student at the German Archaea Centre at the University of Regensburg. Mainly involved in sequencing and genome assembly, annotation, etc."
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/rgbio"
  },
  "_devurl": "https://github.com/richardstoeckl/rgbio",
  "_searchresults": 5,
  "_cargo": true,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/rgbio.html",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "read_gbk",
    "read_genbank",
    "write_gbk",
    "write_genbank"
  ],
  "_help": [
    {
      "page": "read_gbk",
      "title": "Read a GenBank file",
      "topics": [
        "read_gbk"
      ]
    },
    {
      "page": "read_genbank",
      "title": "Read a GenBank file",
      "topics": [
        "read_genbank"
      ]
    },
    {
      "page": "write_gbk",
      "title": "Write GenBank records",
      "topics": [
        "write_gbk"
      ]
    },
    {
      "page": "write_genbank",
      "title": "Write a GenBank file",
      "topics": [
        "write_genbank"
      ]
    }
  ],
  "_readme": "https://github.com/richardstoeckl/rgbio/raw/v0.4.0/README.md",
  "_rundeps": [],
  "_vignettes": [
    {
      "source": "benchmarks.Rmd",
      "filename": "benchmarks.html",
      "title": "Benchmarking rgbio Performance",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Benchmarking rgbio Performance",
        "Benchmark Setup",
        "Data Download Command",
        "Packages Tested",
        "Running the Benchmarks",
        "Processing Results",
        "Results",
        "Performance Visualization",
        "Summary Statistics",
        "Key Findings",
        "Technical Details",
        "Conclusion"
      ],
      "created": "2026-03-06 18:46:05",
      "modified": "2026-05-27 13:37:35",
      "commits": 3
    },
    {
      "source": "rgbio-introduction.Rmd",
      "filename": "rgbio-introduction.html",
      "title": "Introduction to rgbio",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Why rgbio?",
        "Installation",
        "Basic Usage",
        "Loading the Package",
        "Writing and Reading (Tidy Workflow)",
        "Reading Back in Tidy Format",
        "Inspecting the Data",
        "Writing and Reading (Bioconductor Workflow)",
        "Minimum Required Information for write_gbk()",
        "Supported Metadata Fields",
        "Advanced: Complex Locations",
        "Performance",
        "Disclaimer"
      ],
      "created": "2026-02-12 12:05:52",
      "modified": "2026-03-06 18:46:05",
      "commits": 4
    }
  ],
  "_score": 3.778151250383644,
  "_indexed": true,
  "_nocasepkg": "rgbio",
  "_universes": [
    "richardstoeckl"
  ],
  "_previous": "0.3.0",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.4.0",
      "date": "2026-05-27T15:16:17.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "b96a0a9f89d571692fe9e1388d2274c03f19b49d",
      "fileid": "e65423b7c6e7010502cca3891d2b45c9eb2904af84a81fb18f2f01cb02d6662e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/richardstoeckl/actions/runs/26519916041"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.4.0",
      "date": "2026-05-27T15:16:06.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "b96a0a9f89d571692fe9e1388d2274c03f19b49d",
      "fileid": "159cad1f1ad27dc802d332e221cbb232770d5482a193294ac53598b5d73f2e1c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/richardstoeckl/actions/runs/26519916041"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.4.0",
      "date": "2026-05-27T15:15:52.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "b96a0a9f89d571692fe9e1388d2274c03f19b49d",
      "fileid": "f8036b8a6afdb0fcc88e3da29aedd211440a036db141b143a22669a8e84fa111",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/richardstoeckl/actions/runs/26519916041"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.4.0",
      "date": "2026-05-27T15:16:11.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "b96a0a9f89d571692fe9e1388d2274c03f19b49d",
      "fileid": "8007f2679db8c073f2786b1f22ae2c2110e9ad5f8429d19ff619bd040ae75b91",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/richardstoeckl/actions/runs/26519916041"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.4.0",
      "date": "2026-05-27T15:14:55.000Z",
      "arch": "aarch64",
      "commit": "b96a0a9f89d571692fe9e1388d2274c03f19b49d",
      "fileid": "de5b586cfcecd65b4189a52278c3ee9894256e7896f9d1221062fa6b764d83b2",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/richardstoeckl/actions/runs/26519916041"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.4.0",
      "date": "2026-05-27T15:17:25.000Z",
      "arch": "x86_64",
      "commit": "b96a0a9f89d571692fe9e1388d2274c03f19b49d",
      "fileid": "43aecb49fee44a75fdbaa8e9ca021dac9eb1af67d9e60aa8086fa59e4cc18508",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/richardstoeckl/actions/runs/26519916041"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.4.0",
      "date": "2026-05-27T15:15:07.000Z",
      "arch": "aarch64",
      "commit": "b96a0a9f89d571692fe9e1388d2274c03f19b49d",
      "fileid": "2b3f09c4be20e1153b48e92c81a39f3e140fa1f1e312ac8ba582d798380ad2b4",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/richardstoeckl/actions/runs/26519916041"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.4.0",
      "date": "2026-05-27T15:18:41.000Z",
      "arch": "x86_64",
      "commit": "b96a0a9f89d571692fe9e1388d2274c03f19b49d",
      "fileid": "8b77f2d413fe39d54af333f62d53d598833b9be3718119794fcad5297cdaa4d0",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/richardstoeckl/actions/runs/26519916041"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.4.0",
      "date": "2026-05-27T15:16:05.000Z",
      "arch": "emscripten",
      "commit": "b96a0a9f89d571692fe9e1388d2274c03f19b49d",
      "fileid": "c51506d723a33c65b7cac18c12cae2fa3d7156253a4535d7d9ec5fc9f02b9490",
      "status": "success",
      "buildurl": "https://github.com/r-universe/richardstoeckl/actions/runs/26519916041"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.4.0",
      "date": "2026-05-27T15:15:07.000Z",
      "arch": "x86_64",
      "commit": "b96a0a9f89d571692fe9e1388d2274c03f19b49d",
      "fileid": "811dd2defe2ee67b4ffb37cdc7da21dc446d57be1294bbdf8ec7ec125de00e26",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/richardstoeckl/actions/runs/26519916041"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.4.0",
      "date": "2026-05-27T15:14:59.000Z",
      "arch": "x86_64",
      "commit": "b96a0a9f89d571692fe9e1388d2274c03f19b49d",
      "fileid": "9149b6cdff9aaf4fab9ebc42b6a3f177b996fe4a822fbadf7b3fa8932ac45763",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/richardstoeckl/actions/runs/26519916041"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.4.0",
      "date": "2026-05-27T15:15:01.000Z",
      "arch": "x86_64",
      "commit": "b96a0a9f89d571692fe9e1388d2274c03f19b49d",
      "fileid": "ea8139e4c66eefb4f23a2bfc95a14229369d590b4046c3ca82225cc39a9100c1",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/richardstoeckl/actions/runs/26519916041"
    }
  ]
}