Package: rgbio 0.4.0

Richard Stöckl

rgbio: High-Performance GenBank I/O using 'gb-io'

Interfaces with the 'gb-io' Rust crate to provide fast reading and writing of GenBank files. Supports parsing of sequences, features, and metadata into R-friendly data structures.

Authors:Richard Stöckl [aut, cre]

rgbio_0.4.0.tar.gz
rgbio_0.4.0.zip(r-4.7-x86_64)rgbio_0.4.0.zip(r-4.6-x86_64)rgbio_0.4.0.zip(r-4.5-x86_64)
rgbio_0.4.0.tgz(r-4.6-x86_64)rgbio_0.4.0.tgz(r-4.6-arm64)rgbio_0.4.0.tgz(r-4.5-x86_64)rgbio_0.4.0.tgz(r-4.5-arm64)
rgbio_0.4.0.tar.gz(r-4.7-arm64)rgbio_0.4.0.tar.gz(r-4.7-x86_64)rgbio_0.4.0.tar.gz(r-4.6-arm64)rgbio_0.4.0.tar.gz(r-4.6-x86_64)
rgbio_0.4.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
rgbio/json (API)

# Install 'rgbio' in R:
install.packages('rgbio', repos = c('https://richardstoeckl.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/richardstoeckl/rgbio/issues

On CRAN:

Conda:

bioinformaticsbioinformatics-toolgbkfilesgenbank-filesgenbank-parserr-languagerustcargo

3.78 score 5 scripts 4 exports 0 dependencies

Last updated from:b96a0a9f89 (on v0.4.0). Checks:11 NOTE, 2 OK, 2 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64NOTE148
linux-devel-x86_64NOTE155
source / vignettesOK224
linux-release-arm64NOTE136
linux-release-x86_64NOTE166
macos-release-arm64NOTE118
macos-release-x86_64NOTE341
macos-oldrel-arm64NOTE139
macos-oldrel-x86_64NOTE352
windows-devel-arm64FAIL335
windows-devel-x86_64NOTE141
windows-release-arm64FAIL298
windows-release-x86_64NOTE134
windows-oldrel-x86_64NOTE135
wasm-releaseOK138

Exports:read_gbkread_genbankwrite_gbkwrite_genbank

Dependencies:

Benchmarking rgbio Performance
Benchmark Setup | Data Download Command | Packages Tested | Running the Benchmarks | Processing Results | Results | Performance Visualization | Summary Statistics | Key Findings | Technical Details | Conclusion
Rendered frombenchmarks.Rmdusingknitr::rmarkdown

Last update: 2026-05-27
Started: 2026-03-06

Introduction to rgbio
Overview | Why rgbio? | Installation | Basic Usage | Loading the Package | Writing and Reading (Tidy Workflow) | Reading Back in Tidy Format | Inspecting the Data | Writing and Reading (Bioconductor Workflow) | Minimum Required Information for write_gbk() | Supported Metadata Fields | Advanced: Complex Locations | Performance | Disclaimer
Rendered fromrgbio-introduction.Rmdusingknitr::rmarkdown

Last update: 2026-03-06
Started: 2026-02-12